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Apta-Index™: Crude Extracellular Mixture of E. coli - cis (ID# 256)

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Crude Extracellular Mixture of E. coli - cis (ID# 256)

Crude Extracellular Mixture of E. coli - cis
* The secondary structure may not be accurate because of MFOLD limitations on chemistries other than RNA/DNA.
DNA Crude Extracellular Mixture (CEM) of E. coli Protein N/A nM (reported value) Selection Buffer (50 mm HEPES (pH 7.5), 150 mM NaCl, 15 mM MgCl2, and 0.01% Tween 20), r.t. N/A If the oligo is a known aptamer sequence: For binding studies, perform a refolding program to ensure proper function (i.e. binding to antigen or target). Refer to the aptamer reference source for the appropriate refolding parameters and binding conditions. Note: it is unknown whether aptamer functions properly without refolding. In the presence of E. coli CEM, aptamer adopts an active conformation and cleaves the adenosine ribonucleotide residue, separating fluorescein from the dabcyl quencher.
nnn in structure represents (fluorescein-dT)-adenosine ribonucleotide - (dabcyl-dT).
5'-dCpdApdCpdGpdGpdApdTpdCpdCpdTpdGpdApdCpdApdApdGpdGpdApdTpdGpdTpdGpdTpdGpdCpdGpdTpdTpdGpdTpdCpdGpdApdGpdApdCpdCpdTpdGpdCpdGpdApdCpdCpdGpdGpdApdApdCpdApdCpdTpdApdCpdApdCpdTpdGpdTpdGpdTpdGpdGpdGpdApdTpdGpdGpdApdTpdTpdTpdCpdTpdTpdTpdApdCpdApdGpdTpdTpdGpdTpdGpdTpdGpdCpdApdGpdCpdTpdCpdCpdGpdTpdCpdCpdGpdApdCpdTpdCpdTpdTpdCpdCpdTpdApdGpdCp-{Internal/Fluorescein-dT}-rAp-{Internal/Dabcyl-dT}-dGpdGpdTpdTpdCpdGpdApdTpdCpdApdApdGpdAp-3'
125 38623.03 g/mole 1183600.00 L/(mole·cm) 52.80% 0.84 32.63

Note: Information on this aptamer oligo was obtained from the literature and hasn't been validated by Aptagen.

Ali et al. "Fluorogenic DNAzyme Probes as Bacterial Indicators." Angewandte Chemie International Edition, 50 (2011): 3751-3754.

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