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Apta-Index™: Hematoporphyrin IX (ID# 92)

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Hematoporphyrin IX (ID# 92)

Hematoporphyrin IX
* The secondary structure may not be accurate because of MFOLD limitations on chemistries other than RNA/DNA.
DNA Hematoporphyrin IX (HPIX) Small Organic 1.6 µM (reported value) Selection Buffer: 100 mM Tris–acetate (pH 8.0), 200 mM sodium acetate, 50 mM potassium acetate, 25 mM magnesium acetate, 5% dioxane Heated to 95°C for 5 min and then slowly cooled to room temperature. Forms a parallel G-quartet structure.
5'- dTpdApdGpdGpdGpdApdApdTpdTpdCp dGpdTpdCpdGpdApdCpdGpdGpdApdTp dCpdCpdCpdApdApdTpdGpdGpdGpdGp dTpdCpdGpdGpdGpdCpdGpdGpdGpdCp dCpdGpdGpdGpdTpdGpdTpdCpdApdTp dGpdGpdTpdGpdGpdApdCpdGpdGpdAp dGpdApdTpdGpdGpdGpdApdCpdGpdTp dApdGpdApdGpdGpdGpdCpdGpdGpdTp dCpdTpdGpdCpdApdGpdGpdTpdCpdGp dApdCpdGpdCpdApdTpdGpdCpdGpdCpdCpdGp -3'
102 31939.63 g/mole 986100.00 L/(mole·cm) 66.67% 1.01 32.39

Note: Information on this aptamer oligo was obtained from the literature and hasn't been validated by Aptagen.

A Okazawa, A Kobayashi, et al. (2000) In vitro selection of hematoporphyrin binding DNA aptamers. Bioorg Med Chem Lett. 10:2653-2656.

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